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Sounds like you just need to adjust your idle speed set screw... assuming 2Gs still have them.
Utter from-my-posterior guess, but it sounds like the clearer path along with the lack of flex is making the engine run more easily and smoothly, so it's running higher. Some have run into similar problems when they replaced the exhaust, or even just switched to synthetic oil.
The high idle is likely also what's causing the 'clunk' into reverse... the crank is spinning faster than you're used to (or it's supposed to) when switching to R. Should go away once you set the idle lower. Not to mention why it feels like it's rolling faster... it's idling higher, so it actually IS rolling faster.
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-John (Sleeper 90 GSX)
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