After searching and searching online I've yet to figure out why my car won't go into gear while its running.

Things that got done with the tranny out: new clutch, TOB, pressure plate, resurfaced flywheel.

After all that my car still was having issues so I bought a new slave and master cylinder and installed them tonight and bled the hell out of the system. After adjusting the clutch pedal I could either get it so the car would start easy and not go into gear or I could adjust it so it would be a pain to start but it would drive until I stopped then it would continue to not go into gear.

The engine is out of a early 96 talon tsi AWD and the transmission is out of the 97 spyder. So would this be the cause of my issues? since I'm unsure if there is a difference in clearance between the transmission and the motor where it bolts on or between the flywheel and the crankshaft. Any help on this would be much appreciated

Adjusted the pedal some more.. Can get it to go into gear until I drive it then it doesn't want to go into gear anymore.. Should I bleed it again?

I had same issue. Try to reverse bleed it

Care to explain how you do that ?